J4_7PHC_001

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUCUGC*GUAAG

Length

22 nucleotides

Bulged bases

7PHC|1|3|U|441

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PHC_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.5731

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7PHC|1|3|C|272
7PHC|1|3|C|273
*
7PHC|1|3|G|408
7PHC|1|3|A|409
7PHC|1|3|G|410
7PHC|1|3|U|411
7PHC|1|3|A|412
7PHC|1|3|G|413
*
7PHC|1|3|U|435
7PHC|1|3|G|436
7PHC|1|3|A|437
7PHC|1|3|A|438
7PHC|1|3|U|439
7PHC|1|3|C|440
7PHC|1|3|U|441
7PHC|1|3|G|442
7PHC|1|3|C|443
*
7PHC|1|3|G|456
7PHC|1|3|U|457
7PHC|1|3|A|458
7PHC|1|3|A|459
7PHC|1|3|G|460

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain v

50S ribosomal protein L28