J4_7PHC_011
3D structure
- PDB id
- 7PHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.9 Å
Loop
- Sequence
- GCA*UGAAAG*CCGUAAACGAUA*UC
- Length
- 23 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7PHC_011 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.2375
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.2
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
7PHC|1|5|G|573
7PHC|1|5|C|574
7PHC|1|5|A|575
*
7PHC|1|5|U|761
7PHC|1|5|G|762
7PHC|1|5|A|763
7PHC|1|5|A|764
7PHC|1|5|A|765
7PHC|1|5|G|766
*
7PHC|1|5|C|807
7PHC|1|5|C|808
7PHC|1|5|G|809
7PHC|1|5|U|810
7PHC|1|5|A|811
7PHC|1|5|A|812
7PHC|1|5|A|813
7PHC|1|5|C|814
7PHC|1|5|G|815
7PHC|1|5|A|816
7PHC|1|5|U|817
7PHC|1|5|A|818
*
7PHC|1|5|U|873
7PHC|1|5|C|874
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S8
- Chain K
- 30S ribosomal protein S12
- Chain N
- 30S ribosomal protein S15
- Chain T
- 30S ribosomal protein S21
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