J4_7PIR_004
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- UC*GGUUAG*CU*ACCAGUA
- Length
- 17 nucleotides
- Bulged bases
- 7PIR|1|3|U|1369, 7PIR|1|3|A|1370
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7PIR_004 not in the Motif Atlas
- Homologous match to J4_9DFE_005
- Geometric discrepancy: 0.2991
- The information below is about J4_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.1
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
7PIR|1|3|U|1341
7PIR|1|3|C|1342
*
7PIR|1|3|G|1366
7PIR|1|3|G|1367
7PIR|1|3|U|1368
7PIR|1|3|U|1369
7PIR|1|3|A|1370
7PIR|1|3|G|1371
*
7PIR|1|3|C|1432
7PIR|1|3|U|1433
*
7PIR|1|3|A|1631
7PIR|1|3|C|1632
7PIR|1|3|C|1633
7PIR|1|3|A|1634
7PIR|1|3|G|1635
7PIR|1|3|U|1636
7PIR|1|3|A|1637
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain s
- 50S ribosomal protein L23
- Chain w
- 50S ribosomal protein L29
Coloring options: