J4_7PWO_009
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- C(A2M)GGACAAC*GGG*CUGGC*GG
- Length
- 19 nucleotides
- Bulged bases
- 7PWO|1|2|C|91, 7PWO|1|2|G|271
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7PWO_009 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.3672
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.3
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7PWO|1|2|C|86
7PWO|1|2|A2M|87
7PWO|1|2|G|88
7PWO|1|2|G|89
7PWO|1|2|A|90
7PWO|1|2|C|91
7PWO|1|2|A|92
7PWO|1|2|A|93
7PWO|1|2|C|94
*
7PWO|1|2|G|221
7PWO|1|2|G|222
7PWO|1|2|G|223
*
7PWO|1|2|C|269
7PWO|1|2|U|270
7PWO|1|2|G|271
7PWO|1|2|G|272
7PWO|1|2|C|273
*
7PWO|1|2|G|295
7PWO|1|2|G|296
Current chains
- Chain 2
- rRNA 18S
Nearby chains
- Chain E1
- 40S ribosomal protein S4
- Chain I1
- 40S ribosomal protein S8
- Chain L1
- SSU ribosomal protein S17P
- Chain X1
- Ribosomal protein S23
Coloring options: