J4_7PWO_010
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- ACG*CGAAGG*CCGUAAACGGUG*CU
- Length
- 23 nucleotides
- Bulged bases
- 7PWO|1|2|C|504, 7PWO|1|2|A|778
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7PWO_010 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1045
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.2
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
7PWO|1|2|A|503
7PWO|1|2|C|504
7PWO|1|2|G|505
*
7PWO|1|2|C|727
7PWO|1|2|G|728
7PWO|1|2|A|729
7PWO|1|2|A|730
7PWO|1|2|G|731
7PWO|1|2|G|732
*
7PWO|1|2|C|773
7PWO|1|2|C|774
7PWO|1|2|G|775
7PWO|1|2|U|776
7PWO|1|2|A|777
7PWO|1|2|A|778
7PWO|1|2|A|779
7PWO|1|2|C|780
7PWO|1|2|G|781
7PWO|1|2|G|782
7PWO|1|2|U|783
7PWO|1|2|G|784
*
7PWO|1|2|C|845
7PWO|1|2|U|846
Current chains
- Chain 2
- rRNA 18S
Nearby chains
- Chain L1
- SSU ribosomal protein S17P
- Chain N1
- Ribosomal protein S13
- Chain O1
- Ribosomal protein S14
- Chain W1
- Ribosomal protein S15A
- Chain X1
- Ribosomal protein S23
- Chain a1
- 40S ribosomal protein S26
- Chain n1
- Ribosomal protein eL41
- Chain p2
- Ribosomal protein L37a
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