J4_7QCA_001
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CC*GAGUAG*UGAAGA*UAAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QCA_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1851
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.2
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
7QCA|1|L50|C|204
7QCA|1|L50|C|205
*
7QCA|1|L50|G|315
7QCA|1|L50|A|316
7QCA|1|L50|G|317
7QCA|1|L50|U|318
7QCA|1|L50|A|319
7QCA|1|L50|G|320
*
7QCA|1|L50|U|341
7QCA|1|L50|G|342
7QCA|1|L50|A|343
7QCA|1|L50|A|344
7QCA|1|L50|G|345
7QCA|1|L50|A|346
*
7QCA|1|L50|U|363
7QCA|1|L50|A|364
7QCA|1|L50|A|365
7QCA|1|L50|G|366
Current chains
- Chain L50
- RNA 23S
Nearby chains
- Chain LHH
- Ribosomal L29 protein
- Chain LII
- 60S ribosomal protein L36
- Chain LL0
- 60S ribosomal protein L13
- Chain LN0
- Ribosomal protein L15
Coloring options: