J4_7QGU_005

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

7QGU|1|A|U|1380

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGU_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1127

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7QGU|1|A|G|1349
7QGU|1|A|U|1350
7QGU|1|A|U|1351
7QGU|1|A|U|1352
7QGU|1|A|C|1353
*
7QGU|1|A|G|1377
7QGU|1|A|G|1378
7QGU|1|A|U|1379
7QGU|1|A|U|1380
7QGU|1|A|A|1381
7QGU|1|A|G|1382
*
7QGU|1|A|C|1443
7QGU|1|A|C|1444
*
7QGU|1|A|G|1642
7QGU|1|A|C|1643
7QGU|1|A|C|1644
7QGU|1|A|C|1645
7QGU|1|A|G|1646
7QGU|1|A|U|1647
7QGU|1|A|A|1648
7QGU|1|A|C|1649

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34