J4_7QGU_008

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

GACUG*CACAG*UGAC*GCAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGU_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1188

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7QGU|1|A|G|1801
7QGU|1|A|A|1802
7QGU|1|A|C|1803
7QGU|1|A|U|1804
7QGU|1|A|G|1805
*
7QGU|1|A|C|1817
7QGU|1|A|A|1818
7QGU|1|A|C|1819
7QGU|1|A|A|1820
7QGU|1|A|G|1821
*
7QGU|1|A|U|1856
7QGU|1|A|G|1857
7QGU|1|A|A|1858
7QGU|1|A|C|1859
*
7QGU|1|A|G|2004
7QGU|1|A|C|2005
7QGU|1|A|A|2006
7QGU|1|A|A|2007
7QGU|1|A|C|2008

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2