J4_7QIW_001
3D structure
- PDB id
- 7QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- CC*GAGUCG*CAAAUCG*CAAG
- Length
- 19 nucleotides
- Bulged bases
- 7QIW|1|2|C|295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QIW_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1358
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
7QIW|1|2|C|110
7QIW|1|2|C|111
*
7QIW|1|2|G|264
7QIW|1|2|A|265
7QIW|1|2|G|266
7QIW|1|2|U|267
7QIW|1|2|C|268
7QIW|1|2|G|269
*
7QIW|1|2|C|290
7QIW|1|2|A|291
7QIW|1|2|A|292
7QIW|1|2|A|293
7QIW|1|2|U|294
7QIW|1|2|C|295
7QIW|1|2|G|296
*
7QIW|1|2|C|313
7QIW|1|2|A|314
7QIW|1|2|A|315
7QIW|1|2|G|316
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain J
- Ribosomal_L7Ae domain-containing protein
- Chain N
- 60S ribosomal protein L13
- Chain P
- Ribosomal protein L15
- Chain j
- Similar to 60S ribosomal protein L35
- Chain k
- 60S ribosomal protein L36
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