J4_7QIZ_010

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UAA*UC*GCU*GGG

Length

11 nucleotides

Bulged bases

7QIZ|1|2|C|3102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QIZ_010 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.218

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7QIZ|1|2|U|3013
7QIZ|1|2|A|3014
7QIZ|1|2|A|3015
*
7QIZ|1|2|U|3045
7QIZ|1|2|C|3046
*
7QIZ|1|2|G|3101
7QIZ|1|2|C|3102
7QIZ|1|2|U|3103
*
7QIZ|1|2|G|3137
7QIZ|1|2|G|3138
7QIZ|1|2|G|3139

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain Q

Pectinesterase

Chain X

60S ribosomal protein uL14