J4_7QIZ_011
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CAU(PSU)AAAUC*GCC*G(PSU)GAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 7QIZ|1|S2|G|363
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QIZ_011 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.2092
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7QIZ|1|S2|C|100
7QIZ|1|S2|A|101
7QIZ|1|S2|U|102
7QIZ|1|S2|PSU|103
7QIZ|1|S2|A|104
7QIZ|1|S2|A|105
7QIZ|1|S2|A|106
7QIZ|1|S2|U|107
7QIZ|1|S2|C|108
*
7QIZ|1|S2|G|311
7QIZ|1|S2|C|312
7QIZ|1|S2|C|313
*
7QIZ|1|S2|G|361
7QIZ|1|S2|PSU|362
7QIZ|1|S2|G|363
7QIZ|1|S2|A|364
7QIZ|1|S2|C|365
*
7QIZ|1|S2|G|387
7QIZ|1|S2|G|388
Current chains
- Chain S2
- 18S
Nearby chains
- Chain CA
- 40S body ribosomal protein uS12
- Chain w
- 40S ribosomal protein S4
- Chain y
- 40S ribosomal protein S8
- Chain z
- Ribosomal_S17_N domain-containing protein
Coloring options: