J4_7QV3_011

3D structure

PDB id

7QV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.14 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

7QV3|1|V|A|2317

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QV3_011 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1472

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

7QV3|1|V|C|2314
7QV3|1|V|A|2315
7QV3|1|V|A|2316
7QV3|1|V|A|2317
7QV3|1|V|G|2318
*
7QV3|1|V|U|2372
7QV3|1|V|U|2373
7QV3|1|V|G|2374
7QV3|1|V|A|2375
7QV3|1|V|C|2376
*
7QV3|1|V|G|2399
7QV3|1|V|G|2400
7QV3|1|V|G|2401
*
7QV3|1|V|C|2410
7QV3|1|V|G|2411
7QV3|1|V|G|2412

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33 1

Chain 3

50S ribosomal protein L35

Chain W

50S ribosomal protein L27