J4_7QVP_018
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 7QVP|1|L6|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QVP_018 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1345
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
7QVP|1|L6|C|111
7QVP|1|L6|C|112
*
7QVP|1|L6|G|278
7QVP|1|L6|A|279
7QVP|1|L6|G|280
7QVP|1|L6|U|281
7QVP|1|L6|C|282
7QVP|1|L6|G|283
*
7QVP|1|L6|C|304
7QVP|1|L6|A|305
7QVP|1|L6|A|306
7QVP|1|L6|A|307
7QVP|1|L6|G|308
7QVP|1|L6|C|309
7QVP|1|L6|G|310
*
7QVP|1|L6|U|327
7QVP|1|L6|A|328
7QVP|1|L6|A|329
7QVP|1|L6|G|330
Current chains
- Chain L6
- 28S ribosomal RNA
Nearby chains
- Chain ML
- 60S ribosomal protein L13
- Chain MN
- 60S ribosomal protein L15
- Chain Mh
- 60S ribosomal protein L35
- Chain Mi
- 60S ribosomal protein L36
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