J4_7QVP_032
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 7QVP|1|S3|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QVP_032 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.1785
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7QVP|1|S3|C|98
7QVP|1|S3|A|99
7QVP|1|S3|U|100
7QVP|1|S3|U|101
7QVP|1|S3|A|102
7QVP|1|S3|A|103
7QVP|1|S3|A|104
7QVP|1|S3|U|105
7QVP|1|S3|C|106
*
7QVP|1|S3|G|355
7QVP|1|S3|C|356
7QVP|1|S3|C|357
*
7QVP|1|S3|G|405
7QVP|1|S3|U|406
7QVP|1|S3|G|407
7QVP|1|S3|A|408
7QVP|1|S3|C|409
*
7QVP|1|S3|G|431
7QVP|1|S3|G|432
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain RE
- 40S ribosomal protein S4, X isoform
- Chain RI
- 40S ribosomal protein S8
- Chain RL
- 40S ribosomal protein S11
- Chain RX
- 40S ribosomal protein S23
Coloring options: