J4_7S0S_007

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S0S_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0598

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7S0S|1|C|G|1989
7S0S|1|C|A|1990
7S0S|1|C|C|1991
7S0S|1|C|U|1992
7S0S|1|C|G|1993
*
7S0S|1|C|C|2005
7S0S|1|C|A|2006
7S0S|1|C|C|2007
7S0S|1|C|A|2008
7S0S|1|C|G|2009
*
7S0S|1|C|U|2044
7S0S|1|C|G|2045
7S0S|1|C|A|2046
7S0S|1|C|C|2047
*
7S0S|1|C|G|2199
7S0S|1|C|U|2200
7S0S|1|C|A|2201
7S0S|1|C|A|2202
7S0S|1|C|C|2203

Current chains

Chain C

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2