3D structure

PDB id
7S1H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Wild-type Escherichia coli ribosome with antibiotic linezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.35 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7S1H_011 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.0509
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

7S1H|1|I|A|1772
7S1H|1|I|A|1773
7S1H|1|I|C|1774
7S1H|1|I|U|1775
7S1H|1|I|G|1776
*
7S1H|1|I|C|1788
7S1H|1|I|A|1789
7S1H|1|I|C|1790
7S1H|1|I|A|1791
7S1H|1|I|G|1792
*
7S1H|1|I|U|1827
7S1H|1|I|G|1828
7S1H|1|I|A|1829
7S1H|1|I|C|1830
*
7S1H|1|I|G|1975
7S1H|1|I|U|1976
7S1H|1|I|A|1977
7S1H|1|I|A|1978
7S1H|1|I|U|1979

Current chains

Chain I
23S rRNA

Nearby chains

Chain K
50S ribosomal protein L2

Coloring options:


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