J4_7SYJ_003
3D structure
- PDB id
- 7SYJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7SYJ|1|2|A|672
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7SYJ_003 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1676
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7SYJ|1|2|A|671
7SYJ|1|2|A|672
7SYJ|1|2|G|673
*
7SYJ|1|2|C|1032
7SYJ|1|2|G|1033
7SYJ|1|2|A|1034
7SYJ|1|2|A|1035
7SYJ|1|2|A|1036
7SYJ|1|2|G|1037
*
7SYJ|1|2|C|1078
7SYJ|1|2|C|1079
7SYJ|1|2|A|1080
7SYJ|1|2|U|1081
7SYJ|1|2|A|1082
7SYJ|1|2|A|1083
7SYJ|1|2|A|1084
7SYJ|1|2|C|1085
7SYJ|1|2|G|1086
7SYJ|1|2|A|1087
7SYJ|1|2|U|1088
7SYJ|1|2|G|1089
*
7SYJ|1|2|U|1160
7SYJ|1|2|U|1161
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain M
- uS17
- Chain O
- uS15
- Chain P
- uS11
- Chain X
- uS8
- Chain Y
- uS12
- Chain b
- eS26 (S26)
- Chain n
- 60s ribosomal protein l41
Coloring options: