J4_7TOS_010

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOS_010 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.086

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7TOS|1|23S|A|1772
7TOS|1|23S|A|1773
7TOS|1|23S|C|1774
7TOS|1|23S|U|1775
7TOS|1|23S|G|1776
*
7TOS|1|23S|C|1788
7TOS|1|23S|A|1789
7TOS|1|23S|C|1790
7TOS|1|23S|A|1791
7TOS|1|23S|G|1792
*
7TOS|1|23S|U|1827
7TOS|1|23S|G|1828
7TOS|1|23S|A|1829
7TOS|1|23S|C|1830
*
7TOS|1|23S|G|1975
7TOS|1|23S|U|1976
7TOS|1|23S|A|1977
7TOS|1|23S|A|1978
7TOS|1|23S|U|1979

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 16S

Small subunit ribosomal RNA; SSU rRNA

Chain L02

50S ribosomal protein L2