J4_7UNU_008

3D structure

PDB id

7UNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UNU_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0597

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7UNU|1|A|G|1759
7UNU|1|A|A|1760
7UNU|1|A|C|1761
7UNU|1|A|U|1762
7UNU|1|A|G|1763
*
7UNU|1|A|C|1775
7UNU|1|A|A|1776
7UNU|1|A|C|1777
7UNU|1|A|A|1778
7UNU|1|A|G|1779
*
7UNU|1|A|U|1814
7UNU|1|A|G|1815
7UNU|1|A|A|1816
7UNU|1|A|C|1817
*
7UNU|1|A|G|1962
7UNU|1|A|U|1963
7UNU|1|A|A|1964
7UNU|1|A|A|1965
7UNU|1|A|C|1966

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2