J4_7UNV_008

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UNV_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0573

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7UNV|1|A|G|1759
7UNV|1|A|A|1760
7UNV|1|A|C|1761
7UNV|1|A|U|1762
7UNV|1|A|G|1763
*
7UNV|1|A|C|1775
7UNV|1|A|A|1776
7UNV|1|A|C|1777
7UNV|1|A|A|1778
7UNV|1|A|G|1779
*
7UNV|1|A|U|1814
7UNV|1|A|G|1815
7UNV|1|A|A|1816
7UNV|1|A|C|1817
*
7UNV|1|A|G|1962
7UNV|1|A|U|1963
7UNV|1|A|A|1964
7UNV|1|A|A|1965
7UNV|1|A|C|1966

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2