3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7UPH_010 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.2267
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

7UPH|1|I|A|3266
7UPH|1|I|A|3267
7UPH|1|I|C|3268
7UPH|1|I|U|3269
7UPH|1|I|G|3270
*
7UPH|1|I|C|3282
7UPH|1|I|A|3283
7UPH|1|I|C|3284
7UPH|1|I|A|3285
7UPH|1|I|G|3286
*
7UPH|1|I|U|3321
7UPH|1|I|G|3322
7UPH|1|I|A|3323
7UPH|1|I|C|3324
*
7UPH|1|I|G|3469
7UPH|1|I|U|3470
7UPH|1|I|A|3471
7UPH|1|I|A|3472
7UPH|1|I|U|3473

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain K
50S ribosomal protein L2

Coloring options:


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