J4_7UPH_010
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- AACUG*CACAG*UGAC*GUAAU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UPH_010 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.2267
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7UPH|1|I|A|3266
7UPH|1|I|A|3267
7UPH|1|I|C|3268
7UPH|1|I|U|3269
7UPH|1|I|G|3270
*
7UPH|1|I|C|3282
7UPH|1|I|A|3283
7UPH|1|I|C|3284
7UPH|1|I|A|3285
7UPH|1|I|G|3286
*
7UPH|1|I|U|3321
7UPH|1|I|G|3322
7UPH|1|I|A|3323
7UPH|1|I|C|3324
*
7UPH|1|I|G|3469
7UPH|1|I|U|3470
7UPH|1|I|A|3471
7UPH|1|I|A|3472
7UPH|1|I|U|3473
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
Coloring options: