J4_7UPH_012
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 7UPH|1|I|A|3782
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UPH_012 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.462
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7UPH|1|I|C|3779
7UPH|1|I|G|3780
7UPH|1|I|A|3781
7UPH|1|I|A|3782
7UPH|1|I|G|3783
*
7UPH|1|I|U|3837
7UPH|1|I|U|3838
7UPH|1|I|G|3839
7UPH|1|I|A|3840
7UPH|1|I|C|3841
*
7UPH|1|I|G|3864
7UPH|1|I|G|3865
7UPH|1|I|U|3866
*
7UPH|1|I|A|3875
7UPH|1|I|G|3876
7UPH|1|I|G|3877
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain j
- 50S ribosomal protein L33
- Chain l
- 50S ribosomal protein L35
- Chain n
- 50S ribosomal protein L18
- Chain v
- 50S ribosomal protein L27
Coloring options: