J4_7Z20_008

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Z20_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0378

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7Z20|1|b|A|1771
7Z20|1|b|A|1772
7Z20|1|b|C|1773
7Z20|1|b|U|1774
7Z20|1|b|G|1775
*
7Z20|1|b|C|1787
7Z20|1|b|A|1788
7Z20|1|b|C|1789
7Z20|1|b|A|1790
7Z20|1|b|G|1791
*
7Z20|1|b|U|1826
7Z20|1|b|G|1827
7Z20|1|b|A|1828
7Z20|1|b|C|1829
*
7Z20|1|b|G|1974
7Z20|1|b|U|1975
7Z20|1|b|A|1976
7Z20|1|b|A|1977
7Z20|1|b|U|1978

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2