J4_7ZFW_001

3D structure

PDB id

7ZFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 80S ribosome obtained from ssDNA coated grid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

7ZFW|1|L5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZFW_001 not in the Motif Atlas

Homologous match to J4_8P9A_012

Geometric discrepancy: 0.1104

The information below is about J4_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7ZFW|1|L5|C|111
7ZFW|1|L5|C|112
*
7ZFW|1|L5|G|278
7ZFW|1|L5|A|279
7ZFW|1|L5|G|280
7ZFW|1|L5|U|281
7ZFW|1|L5|C|282
7ZFW|1|L5|G|283
*
7ZFW|1|L5|C|304
7ZFW|1|L5|A|305
7ZFW|1|L5|A|306
7ZFW|1|L5|A|307
7ZFW|1|L5|G|308
7ZFW|1|L5|C|309
7ZFW|1|L5|G|310
*
7ZFW|1|L5|U|327
7ZFW|1|L5|A|328
7ZFW|1|L5|A|329
7ZFW|1|L5|G|330

Current chains

Chain L5

RNA (615-MER)

Nearby chains