J4_7ZJW_001
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 7ZJW|1|L5|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZJW_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1323
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7ZJW|1|L5|C|111
7ZJW|1|L5|C|112
*
7ZJW|1|L5|G|278
7ZJW|1|L5|A|279
7ZJW|1|L5|G|280
7ZJW|1|L5|U|281
7ZJW|1|L5|C|282
7ZJW|1|L5|G|283
*
7ZJW|1|L5|C|304
7ZJW|1|L5|A|305
7ZJW|1|L5|A|306
7ZJW|1|L5|A|307
7ZJW|1|L5|G|308
7ZJW|1|L5|C|309
7ZJW|1|L5|G|310
*
7ZJW|1|L5|U|327
7ZJW|1|L5|A|328
7ZJW|1|L5|A|329
7ZJW|1|L5|G|330
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LO
- 60S ribosomal protein eL13
- Chain LQ
- 60S ribosomal protein L15
- Chain Lk
- 60S ribosomal protein uL29
- Chain Ll
- 60S ribosomal protein L36
Coloring options: