J4_7ZJW_013
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 7ZJW|1|L5|A|3980
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZJW_013 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.198
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7ZJW|1|L5|C|3977
7ZJW|1|L5|U|3978
7ZJW|1|L5|A|3979
7ZJW|1|L5|A|3980
7ZJW|1|L5|G|3981
*
7ZJW|1|L5|U|4035
7ZJW|1|L5|U|4036
7ZJW|1|L5|G|4037
7ZJW|1|L5|A|4038
7ZJW|1|L5|PSU|4039
*
7ZJW|1|L5|A|4063
7ZJW|1|L5|C|4064
7ZJW|1|L5|C|4065
*
7ZJW|1|L5|G|4074
7ZJW|1|L5|G|4075
7ZJW|1|L5|G|4076
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LG
- Ribosomal_L18_c domain-containing protein
- Chain LW
- 60S ribosomal protein eL21
- Chain Le
- 60S ribosomal protein L29
- Chain Lq
- 60S ribosomal protein eL42
Coloring options: