J4_7ZJW_015
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- C(A2M)UUAAA(PSU)C*GCC*G(PSU)GAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 7ZJW|1|S2|G|408
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZJW_015 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.2124
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7ZJW|1|S2|C|98
7ZJW|1|S2|A2M|99
7ZJW|1|S2|U|100
7ZJW|1|S2|U|101
7ZJW|1|S2|A|102
7ZJW|1|S2|A|103
7ZJW|1|S2|A|104
7ZJW|1|S2|PSU|105
7ZJW|1|S2|C|106
*
7ZJW|1|S2|G|356
7ZJW|1|S2|C|357
7ZJW|1|S2|C|358
*
7ZJW|1|S2|G|406
7ZJW|1|S2|PSU|407
7ZJW|1|S2|G|408
7ZJW|1|S2|A|409
7ZJW|1|S2|C|410
*
7ZJW|1|S2|G|432
7ZJW|1|S2|G|433
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein eS4
- Chain ST
- 40S ribosomal protein S8
- Chain SW
- 40S ribosomal protein S11
- Chain Si
- 40S ribosomal protein S23
Coloring options: