J4_7ZJW_016
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7ZJW|1|S2|A|673, 7ZJW|1|S2|A|1084, 7ZJW|1|S2|C|1086, 7ZJW|1|S2|A|1088
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZJW_016 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1163
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7ZJW|1|S2|A|672
7ZJW|1|S2|A|673
7ZJW|1|S2|G|674
*
7ZJW|1|S2|C|1033
7ZJW|1|S2|G|1034
7ZJW|1|S2|A|1035
7ZJW|1|S2|A|1036
7ZJW|1|S2|A|1037
7ZJW|1|S2|G|1038
*
7ZJW|1|S2|C|1079
7ZJW|1|S2|C|1080
7ZJW|1|S2|A|1081
7ZJW|1|S2|PSU|1082
7ZJW|1|S2|A|1083
7ZJW|1|S2|A|1084
7ZJW|1|S2|A|1085
7ZJW|1|S2|C|1086
7ZJW|1|S2|G|1087
7ZJW|1|S2|A|1088
7ZJW|1|S2|U|1089
7ZJW|1|S2|G|1090
*
7ZJW|1|S2|U|1161
7ZJW|1|S2|U|1162
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lr
- 60S ribosomal protein eL43
- Chain SF
- Ribosomal protein eS26
- Chain SW
- 40S ribosomal protein S11
- Chain SY
- 40S ribosomal protein uS15
- Chain SZ
- 40S ribosomal protein uS11
- Chain Sh
- 40S ribosomal protein S15a
- Chain Si
- 40S ribosomal protein S23
- Chain Sl
- 60S ribosomal protein L41
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