3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
Length
23 nucleotides
Bulged bases
7ZJW|1|S2|A|673, 7ZJW|1|S2|A|1084, 7ZJW|1|S2|C|1086, 7ZJW|1|S2|A|1088
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7ZJW_016 not in the Motif Atlas
Homologous match to J4_8P9A_022
Geometric discrepancy: 0.1163
The information below is about J4_8P9A_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

7ZJW|1|S2|A|672
7ZJW|1|S2|A|673
7ZJW|1|S2|G|674
*
7ZJW|1|S2|C|1033
7ZJW|1|S2|G|1034
7ZJW|1|S2|A|1035
7ZJW|1|S2|A|1036
7ZJW|1|S2|A|1037
7ZJW|1|S2|G|1038
*
7ZJW|1|S2|C|1079
7ZJW|1|S2|C|1080
7ZJW|1|S2|A|1081
7ZJW|1|S2|PSU|1082
7ZJW|1|S2|A|1083
7ZJW|1|S2|A|1084
7ZJW|1|S2|A|1085
7ZJW|1|S2|C|1086
7ZJW|1|S2|G|1087
7ZJW|1|S2|A|1088
7ZJW|1|S2|U|1089
7ZJW|1|S2|G|1090
*
7ZJW|1|S2|U|1161
7ZJW|1|S2|U|1162

Current chains

Chain S2
18S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain Lr
60S ribosomal protein eL43
Chain SF
Ribosomal protein eS26
Chain SW
40S ribosomal protein S11
Chain SY
40S ribosomal protein uS15
Chain SZ
40S ribosomal protein uS11
Chain Sh
40S ribosomal protein S15a
Chain Si
40S ribosomal protein S23
Chain Sl
60S ribosomal protein L41

Coloring options:


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