J4_7ZP8_008

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZP8_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0759

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7ZP8|1|b|A|1772
7ZP8|1|b|A|1773
7ZP8|1|b|C|1774
7ZP8|1|b|U|1775
7ZP8|1|b|G|1776
*
7ZP8|1|b|C|1788
7ZP8|1|b|A|1789
7ZP8|1|b|C|1790
7ZP8|1|b|A|1791
7ZP8|1|b|G|1792
*
7ZP8|1|b|U|1827
7ZP8|1|b|G|1828
7ZP8|1|b|A|1829
7ZP8|1|b|C|1830
*
7ZP8|1|b|G|1975
7ZP8|1|b|U|1976
7ZP8|1|b|A|1977
7ZP8|1|b|A|1978
7ZP8|1|b|U|1979

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2