J4_7ZQ6_009

3D structure

PDB id

7ZQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZQ6_009 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0507

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7ZQ6|1|b|A|1772
7ZQ6|1|b|A|1773
7ZQ6|1|b|C|1774
7ZQ6|1|b|U|1775
7ZQ6|1|b|G|1776
*
7ZQ6|1|b|C|1788
7ZQ6|1|b|A|1789
7ZQ6|1|b|C|1790
7ZQ6|1|b|A|1791
7ZQ6|1|b|G|1792
*
7ZQ6|1|b|U|1827
7ZQ6|1|b|G|1828
7ZQ6|1|b|A|1829
7ZQ6|1|b|C|1830
*
7ZQ6|1|b|G|1975
7ZQ6|1|b|U|1976
7ZQ6|1|b|A|1977
7ZQ6|1|b|A|1978
7ZQ6|1|b|U|1979

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2