J4_8A5I_007

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GACUG*CACAG*UGAC*GCAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8A5I_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0472

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8A5I|1|A|G|1805
8A5I|1|A|A|1806
8A5I|1|A|C|1807
8A5I|1|A|U|1808
8A5I|1|A|G|1809
*
8A5I|1|A|C|1821
8A5I|1|A|A|1822
8A5I|1|A|C|1823
8A5I|1|A|A|1824
8A5I|1|A|G|1825
*
8A5I|1|A|U|1860
8A5I|1|A|G|1861
8A5I|1|A|A|1862
8A5I|1|A|C|1863
*
8A5I|1|A|G|2008
8A5I|1|A|C|2009
8A5I|1|A|A|2010
8A5I|1|A|A|2011
8A5I|1|A|C|2012

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L2