J4_8B2L_001
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CC*GAGUCG*CAAAUC(OMG)*CAAG
- Length
- 19 nucleotides
- Bulged bases
- 8B2L|1|A3|C|295
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8B2L_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1588
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.2
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
8B2L|1|A3|C|110
8B2L|1|A3|C|111
*
8B2L|1|A3|G|264
8B2L|1|A3|A|265
8B2L|1|A3|G|266
8B2L|1|A3|U|267
8B2L|1|A3|C|268
8B2L|1|A3|G|269
*
8B2L|1|A3|C|290
8B2L|1|A3|A|291
8B2L|1|A3|A|292
8B2L|1|A3|A|293
8B2L|1|A3|U|294
8B2L|1|A3|C|295
8B2L|1|A3|OMG|296
*
8B2L|1|A3|C|313
8B2L|1|A3|A|314
8B2L|1|A3|A|315
8B2L|1|A3|G|316
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain D3
- 60S ribosomal protein L13
- Chain F3
- Ribosomal protein L15
- Chain U3
- eL36 (60S ribosomal protein L36)
- Chain n3
- 60S ribosomal protein L35-like
Coloring options: