J4_8B2L_014
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*(PSU)U
- Length
- 23 nucleotides
- Bulged bases
- 8B2L|1|h1|A|626, 8B2L|1|h1|A|1029, 8B2L|1|h1|C|1031, 8B2L|1|h1|A|1033
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8B2L_014 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.152
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.2
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
8B2L|1|h1|A|625
8B2L|1|h1|A|626
8B2L|1|h1|G|627
*
8B2L|1|h1|C|978
8B2L|1|h1|G|979
8B2L|1|h1|A|980
8B2L|1|h1|A|981
8B2L|1|h1|A|982
8B2L|1|h1|G|983
*
8B2L|1|h1|C|1024
8B2L|1|h1|C|1025
8B2L|1|h1|A|1026
8B2L|1|h1|PSU|1027
8B2L|1|h1|A|1028
8B2L|1|h1|A|1029
8B2L|1|h1|A|1030
8B2L|1|h1|C|1031
8B2L|1|h1|G|1032
8B2L|1|h1|A|1033
8B2L|1|h1|U|1034
8B2L|1|h1|G|1035
*
8B2L|1|h1|PSU|1106
8B2L|1|h1|U|1107
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain J1
- 40S ribosomal protein S26
- Chain S1
- 40S ribosomal protein S14-2
- Chain T1
- 40S ribosomal protein S23
- Chain W1
- 30S ribosomal protein S15, chloroplastic
- Chain X1
- 40S ribosomal protein S11-like
- Chain a3
- 60S ribosomal protein L37a
- Chain e1
- 40S ribosomal protein S15a-1
- Chain p3
- 60S ribosomal protein L41
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