J4_8B5L_011
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 8B5L|1|5|A|3980
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8B5L_011 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.2098
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8B5L|1|5|C|3977
8B5L|1|5|U|3978
8B5L|1|5|A|3979
8B5L|1|5|A|3980
8B5L|1|5|G|3981
*
8B5L|1|5|U|4035
8B5L|1|5|U|4036
8B5L|1|5|G|4037
8B5L|1|5|A|4038
8B5L|1|5|PSU|4039
*
8B5L|1|5|A|4063
8B5L|1|5|C|4064
8B5L|1|5|C|4065
*
8B5L|1|5|G|4074
8B5L|1|5|G|4075
8B5L|1|5|G|4076
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain T
- 60S ribosomal protein L21
- Chain b
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L36a-like
Coloring options: