J4_8BH7_002

3D structure

PDB id

8BH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complex of immature 30S ribosomal subunit with Ribosome maturation factor P (RimP) from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

4.23 Å

Loop

Sequence

GAC*GAUAAUA*UGAAAG*CAC

Length

19 nucleotides

Bulged bases

8BH7|1|a|U|183, 8BH7|1|a|A|212

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BH7_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.4612

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8BH7|1|a|G|142
8BH7|1|a|A|143
8BH7|1|a|C|144
*
8BH7|1|a|G|178
8BH7|1|a|A|179
8BH7|1|a|U|180
8BH7|1|a|A|181
8BH7|1|a|A|182
8BH7|1|a|U|183
8BH7|1|a|A|184
*
8BH7|1|a|U|208
8BH7|1|a|G|209
8BH7|1|a|A|210
8BH7|1|a|A|211
8BH7|1|a|A|212
8BH7|1|a|G|213
*
8BH7|1|a|C|227
8BH7|1|a|A|228
8BH7|1|a|C|229

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20