J4_8BR8_008
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CCACG*CCGAC*GCC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 8BR8|1|Lt|C|2081
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BR8_008 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.194
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.2
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8BR8|1|Lt|C|2078
8BR8|1|Lt|C|2079
8BR8|1|Lt|A|2080
8BR8|1|Lt|C|2081
8BR8|1|Lt|G|2082
*
8BR8|1|Lt|C|2136
8BR8|1|Lt|C|2137
8BR8|1|Lt|G|2138
8BR8|1|Lt|A|2139
8BR8|1|Lt|C|2140
*
8BR8|1|Lt|G|2164
8BR8|1|Lt|C|2165
8BR8|1|Lt|C|2166
*
8BR8|1|Lt|G|2175
8BR8|1|Lt|G|2176
8BR8|1|Lt|G|2177
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LF
- Ribosomal protein L5
- Chain LU
- Ribosomal protein L21
- Chain Lc
- 60S ribosomal protein L29
- Chain Lp
- Ribosomal protein L44
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