J4_8BR8_010
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CAGGACAAC*GGG*CUGGC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8BR8|1|St|C|91, 8BR8|1|St|G|272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BR8_010 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.3591
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8BR8|1|St|C|86
8BR8|1|St|A|87
8BR8|1|St|G|88
8BR8|1|St|G|89
8BR8|1|St|A|90
8BR8|1|St|C|91
8BR8|1|St|A|92
8BR8|1|St|A|93
8BR8|1|St|C|94
*
8BR8|1|St|G|222
8BR8|1|St|G|223
8BR8|1|St|G|224
*
8BR8|1|St|C|270
8BR8|1|St|U|271
8BR8|1|St|G|272
8BR8|1|St|G|273
8BR8|1|St|C|274
*
8BR8|1|St|G|296
8BR8|1|St|G|297
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4
- Chain SI
- 40S ribosomal protein S8
- Chain SM
- Ribosomal protein S11
- Chain SO
- Ribosomal protein S23
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