J4_8C91_009

3D structure

PDB id

8C91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.19 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C91_009 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.3552

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8C91|1|A|A|1772
8C91|1|A|A|1773
8C91|1|A|C|1774
8C91|1|A|U|1775
8C91|1|A|G|1776
*
8C91|1|A|C|1788
8C91|1|A|A|1789
8C91|1|A|C|1790
8C91|1|A|A|1791
8C91|1|A|G|1792
*
8C91|1|A|U|1827
8C91|1|A|G|1828
8C91|1|A|A|1829
8C91|1|A|C|1830
*
8C91|1|A|G|1975
8C91|1|A|U|1976
8C91|1|A|A|1977
8C91|1|A|A|1978
8C91|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains