J4_8C94_004

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

8C94|1|A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C94_004 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.2392

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8C94|1|A|C|2285
8C94|1|A|G|2286
8C94|1|A|A|2287
8C94|1|A|A|2288
8C94|1|A|G|2289
*
8C94|1|A|U|2343
8C94|1|A|U|2344
8C94|1|A|G|2345
8C94|1|A|A|2346
8C94|1|A|C|2347
*
8C94|1|A|G|2370
8C94|1|A|G|2371
8C94|1|A|U|2372
*
8C94|1|A|A|2381
8C94|1|A|G|2382
8C94|1|A|G|2383

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27