3D structure

PDB id
8CAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Evernimicin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.86 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8CAM_008 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.0332
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8CAM|1|a|A|1772
8CAM|1|a|A|1773
8CAM|1|a|C|1774
8CAM|1|a|U|1775
8CAM|1|a|G|1776
*
8CAM|1|a|C|1788
8CAM|1|a|A|1789
8CAM|1|a|C|1790
8CAM|1|a|A|1791
8CAM|1|a|G|1792
*
8CAM|1|a|U|1827
8CAM|1|a|G|1828
8CAM|1|a|A|1829
8CAM|1|a|C|1830
*
8CAM|1|a|G|1975
8CAM|1|a|U|1976
8CAM|1|a|A|1977
8CAM|1|a|A|1978
8CAM|1|a|U|1979

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
Large ribosomal subunit protein uL2

Coloring options:


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