J4_8CIV_012
3D structure
- PDB id
- 8CIV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- C(A2M)UUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8CIV|1|c|A|359
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CIV_012 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.0783
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CIV|1|c|C|99
8CIV|1|c|A2M|100
8CIV|1|c|U|101
8CIV|1|c|U|102
8CIV|1|c|A|103
8CIV|1|c|A|104
8CIV|1|c|A|105
8CIV|1|c|U|106
8CIV|1|c|C|107
*
8CIV|1|c|G|307
8CIV|1|c|C|308
8CIV|1|c|C|309
*
8CIV|1|c|G|357
8CIV|1|c|U|358
8CIV|1|c|A|359
8CIV|1|c|A|360
8CIV|1|c|C|361
*
8CIV|1|c|G|383
8CIV|1|c|G|384
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain h
- 40S ribosomal protein S4-A
- Chain l
- 40S ribosomal protein S8-B
- Chain o
- 40S ribosomal protein S11-A
- Chain z
- 40S ribosomal protein S23-A
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