J4_8CVM_009

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVM_009 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0506

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8CVM|1|a|G|1955
8CVM|1|a|A|1956
8CVM|1|a|C|1957
8CVM|1|a|U|1958
8CVM|1|a|G|1959
*
8CVM|1|a|C|1971
8CVM|1|a|A|1972
8CVM|1|a|C|1973
8CVM|1|a|A|1974
8CVM|1|a|G|1975
*
8CVM|1|a|U|2010
8CVM|1|a|G|2011
8CVM|1|a|A|2012
8CVM|1|a|C|2013
*
8CVM|1|a|G|2158
8CVM|1|a|U|2159
8CVM|1|a|A|2160
8CVM|1|a|A|2161
8CVM|1|a|C|2162

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2