J4_8CVM_011
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 8CVM|1|a|A|2470, 8CVM|1|a|G|2564
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CVM_011 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.1067
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8CVM|1|a|C|2467
8CVM|1|a|A|2468
8CVM|1|a|A|2469
8CVM|1|a|A|2470
8CVM|1|a|G|2471
*
8CVM|1|a|U|2525
8CVM|1|a|U|2526
8CVM|1|a|G|2527
8CVM|1|a|A|2528
8CVM|1|a|C|2529
*
8CVM|1|a|G|2552
8CVM|1|a|G|2553
8CVM|1|a|G|2554
*
8CVM|1|a|C|2563
8CVM|1|a|G|2564
8CVM|1|a|G|2565
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain 2
- 50S ribosomal protein L35
- Chain n
- 50S ribosomal protein L18
- Chain v
- 50S ribosomal protein L27
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