J4_8ETI_003
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAA*UC*GCC*GUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ETI_003 not in the Motif Atlas
- Homologous match to J4_8P9A_020
- Geometric discrepancy: 0.2044
- The information below is about J4_8P9A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_37757.1
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8ETI|1|1|U|3106
8ETI|1|1|A|3107
8ETI|1|1|A|3108
*
8ETI|1|1|U|3138
8ETI|1|1|C|3139
*
8ETI|1|1|G|3194
8ETI|1|1|C|3195
8ETI|1|1|C|3196
*
8ETI|1|1|G|3230
8ETI|1|1|U|3231
8ETI|1|1|G|3232
Current chains
- Chain 1
- RNA (1564-MER)
Nearby chains
- Chain B
- 60S ribosomal protein L3-A
- Chain O
- 60S ribosomal protein L16-B
- Chain V
- 60S ribosomal protein L23-A
- Chain z
- UPF0642 protein C32H8.05
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