J4_8FL9_008
3D structure
- PDB id
- 8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State J3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 8FL9|1|L3|A|4234
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FL9_008 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.1866
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8FL9|1|L3|C|4231
8FL9|1|L3|U|4232
8FL9|1|L3|A|4233
8FL9|1|L3|A|4234
8FL9|1|L3|G|4235
*
8FL9|1|L3|U|4289
8FL9|1|L3|U|4290
8FL9|1|L3|G|4291
8FL9|1|L3|A|4292
8FL9|1|L3|PSU|4293
*
8FL9|1|L3|A|4317
8FL9|1|L3|C|4318
8FL9|1|L3|C|4319
*
8FL9|1|L3|G|4328
8FL9|1|L3|G|4329
8FL9|1|L3|G|4330
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LE
- 60S ribosomal protein L21
- Chain LM
- 60S ribosomal protein L29
- Chain LV
- 60S ribosomal protein L36a
- Chain SB
- 60S ribosomal protein L5
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