J4_8FRU_009
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CCACG*CCGAC*GCC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 8FRU|1|1|C|2079
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FRU_009 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.2055
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8FRU|1|1|C|2076
8FRU|1|1|C|2077
8FRU|1|1|A|2078
8FRU|1|1|C|2079
8FRU|1|1|G|2080
*
8FRU|1|1|C|2134
8FRU|1|1|C|2135
8FRU|1|1|G|2136
8FRU|1|1|A|2137
8FRU|1|1|C|2138
*
8FRU|1|1|G|2162
8FRU|1|1|C|2163
8FRU|1|1|C|2164
*
8FRU|1|1|G|2173
8FRU|1|1|G|2174
8FRU|1|1|G|2175
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein uL18
- Chain T
- 60S ribosomal protein eL21
- Chain o
- 60S ribosomal protein eL42
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