3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
CC*GAGUCG*CAAAGCG*UAAG
Length
19 nucleotides
Bulged bases
8G61|1|L5|C|309
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8G61_002 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.1105
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_94698.1
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
Number of instances in this motif group
10

Unit IDs

8G61|1|L5|C|111
8G61|1|L5|C|112
*
8G61|1|L5|G|278
8G61|1|L5|A|279
8G61|1|L5|G|280
8G61|1|L5|U|281
8G61|1|L5|C|282
8G61|1|L5|G|283
*
8G61|1|L5|C|304
8G61|1|L5|A|305
8G61|1|L5|A|306
8G61|1|L5|A|307
8G61|1|L5|G|308
8G61|1|L5|C|309
8G61|1|L5|G|310
*
8G61|1|L5|U|327
8G61|1|L5|A|328
8G61|1|L5|A|329
8G61|1|L5|G|330

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LL
60S ribosomal protein L13
Chain LN
60S ribosomal protein L15
Chain Lh
60S ribosomal protein L35
Chain Li
60S ribosomal protein L36

Coloring options:


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