J4_8HL2_005

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAGCGAAG*UC*GUCUG*CG

Length

17 nucleotides

Bulged bases

8HL2|1|A23S|G|1417, 8HL2|1|A23S|A|1418, 8HL2|1|A23S|A|1419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HL2_005 not in the Motif Atlas

Homologous match to J4_4V9F_003

Geometric discrepancy: 0.3619

The information below is about J4_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75426.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8HL2|1|A23S|C|1413
8HL2|1|A23S|A|1414
8HL2|1|A23S|G|1415
8HL2|1|A23S|C|1416
8HL2|1|A23S|G|1417
8HL2|1|A23S|A|1418
8HL2|1|A23S|A|1419
8HL2|1|A23S|G|1420
*
8HL2|1|A23S|U|1438
8HL2|1|A23S|C|1439
*
8HL2|1|A23S|G|1800
8HL2|1|A23S|U|1801
8HL2|1|A23S|C|1802
8HL2|1|A23S|U|1803
8HL2|1|A23S|G|1804
*
8HL2|1|A23S|C|2138
8HL2|1|A23S|G|2139

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L19E

50S ribosomal protein L19e

Chain L22P

50S ribosomal protein L22

Chain L31E

50S ribosomal protein L31e

Chain L47A

50S ribosomal protein L47A