J4_8HL2_011

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAAG*CUGAC*GAC*GGG

Length

16 nucleotides

Bulged bases

8HL2|1|A23S|A|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HL2_011 not in the Motif Atlas

Homologous match to J4_4V9F_009

Geometric discrepancy: 0.3321

The information below is about J4_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

8HL2|1|A23S|C|2407
8HL2|1|A23S|A|2408
8HL2|1|A23S|A|2409
8HL2|1|A23S|A|2410
8HL2|1|A23S|G|2411
*
8HL2|1|A23S|C|2465
8HL2|1|A23S|U|2466
8HL2|1|A23S|G|2467
8HL2|1|A23S|A|2468
8HL2|1|A23S|C|2469
*
8HL2|1|A23S|G|2495
8HL2|1|A23S|A|2496
8HL2|1|A23S|C|2497
*
8HL2|1|A23S|G|2506
8HL2|1|A23S|G|2507
8HL2|1|A23S|G|2508

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L21E

50S ribosomal protein L21e

Chain L44E

50S ribosomal protein L44e