J4_8IP9_001
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8IP9|1|aa|G|363
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8IP9_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.1201
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8IP9|1|aa|C|100
8IP9|1|aa|A|101
8IP9|1|aa|U|102
8IP9|1|aa|U|103
8IP9|1|aa|A|104
8IP9|1|aa|A|105
8IP9|1|aa|A|106
8IP9|1|aa|U|107
8IP9|1|aa|C|108
*
8IP9|1|aa|G|311
8IP9|1|aa|C|312
8IP9|1|aa|C|313
*
8IP9|1|aa|G|361
8IP9|1|aa|U|362
8IP9|1|aa|G|363
8IP9|1|aa|A|364
8IP9|1|aa|C|365
*
8IP9|1|aa|G|387
8IP9|1|aa|G|388
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain ca
- 40S ribosomal protein eS8
- Chain ga
- 40S ribosomal protein S23
- Chain ib
- 40S ribosomal protein uS17
- Chain ja
- 40S ribosomal protein eS4
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